Index

A

add_flow_extension() (in module vampy.automatedPreprocessing.preprocessing_common)

AddElement() (vampy.automatedPreprocessing.ImportData.Network method) addPoint() (vampy.automatedPreprocessing.DisplayData.VtkPointCloud method)

B

beta() (in module vampy.simulation.Artery)

C

check_if_closed_surface() (in module vampy.automatedPreprocessing.preprocessing_common) CheckTotalFlowRate() (vampy.automatedPreprocessing.NetworkBoundaryConditions.FlowSplitting method) clean_surface() (in module vampy.automatedPreprocessing.repair_tools) clearPoints() (vampy.automatedPreprocessing.DisplayData.VtkPointCloud method) compute_boundary_geometry_acrn() (in module vampy.simulation.Womersley) compute_centers_for_meshing() (in module vampy.automatedPreprocessing.preprocessing_common) compute_distance_to_sphere() (in module vampy.automatedPreprocessing.preprocessing_common) compute_flow_and_simulation_metrics() (in module vampy.automatedPostprocessing.compute_flow_and_simulation_metrics) compute_flow_rate() (in module vampy.automatedPreprocessing.preprocessing_common) compute_hemodynamic_indices() (in module vampy.automatedPostprocessing.compute_hemodynamic_indices) compute_u_avg() (in module vampy.automatedPostprocessing.compute_flow_and_simulation_metrics) compute_velocity_and_pressure() (in module vampy.automatedPostprocessing.compute_velocity_and_pressure)

ComputeAlphas() (vampy.automatedPreprocessing.NetworkBoundaryConditions.FlowSplitting method) ComputeBetas() (vampy.automatedPreprocessing.NetworkBoundaryConditions.FlowSplitting method) ComputeBranchLength() (in module vampy.automatedPreprocessing.ImportData) ComputeBranchRadius() (in module vampy.automatedPreprocessing.ImportData) ComputeConnectivity() (in module vampy.automatedPreprocessing.ImportData) ComputeGammas() (vampy.automatedPreprocessing.NetworkBoundaryConditions.FlowSplitting method) ComputeGeometricTolerance() (in module vampy.automatedPreprocessing.ImportData) ComputeGroupLength() (in module vampy.automatedPreprocessing.ImportData) ComputeGroupRadius() (in module vampy.automatedPreprocessing.ImportData) ComputeInletAverageCrossSectionArea() (in module vampy.automatedPreprocessing.ImportData) ComputeInletAverageRadius() (in module vampy.automatedPreprocessing.ImportData) create_bcs() (in module vampy.simulation.Artery) (in module vampy.simulation.Atrium)

D

define_functions_and_iterate_dataset() (in module vampy.automatedPostprocessing.compute_flow_and_simulation_metrics) DisplayModel (class in vampy.automatedPreprocessing.DisplayData) DisplayProbesAndModel() (vampy.automatedPreprocessing.DisplayData.DisplayModel method) dist_sphere_constant() (in module vampy.automatedPreprocessing.preprocessing_common)

dist_sphere_curvature() (in module vampy.automatedPreprocessing.preprocessing_common) dist_sphere_diam() (in module vampy.automatedPreprocessing.preprocessing_common) dist_sphere_geodesic() (in module vampy.automatedPreprocessing.preprocessing_common) dump_probes() (in module vampy.simulation.simulation_common)

E

easing_cos() (in module vampy.automatedPreprocessing.moving_common) Element (class in vampy.automatedPreprocessing.ImportData) epsilon() (in module vampy.automatedPostprocessing.postprocessing_common)

eval() (vampy.simulation.Womersley.WomersleyComponent method) Execute() (vampy.automatedPreprocessing.vmtk_pointselector.vmtkPickPointSeedSelector method) (vampy.automatedPreprocessing.vmtk_pointselector.vmtkSeedSelector method) exists() (in module vampy.automatedPreprocessing.simulate)

F

find_and_delete_nan_triangles() (in module vampy.automatedPreprocessing.repair_tools) find_boundaries() (in module vampy.automatedPreprocessing.preprocessing_common)

FlowSplitting (class in vampy.automatedPreprocessing.NetworkBoundaryConditions) fourier_coefficients() (in module vampy.simulation.Womersley)

G

generate_mesh() (in module vampy.automatedPreprocessing.preprocessing_common) get_centers_for_meshing() (in module vampy.automatedPreprocessing.preprocessing_common) get_dataset_names() (in module vampy.automatedPostprocessing.postprocessing_common) get_file_paths() (in module vampy.simulation.simulation_common) get_files_for_cycle_averaging() (in module vampy.automatedPostprocessing.compute_flow_and_simulation_metrics) get_files_for_phase_averaging() (in module vampy.automatedPostprocessing.compute_flow_and_simulation_metrics) get_furtest_surface_point() (in module vampy.automatedPreprocessing.preprocessing_common) get_point_map() (in module vampy.automatedPreprocessing.moving_common) get_regions_to_refine() (in module vampy.automatedPreprocessing.preprocessing_common) GetAlpha() (vampy.automatedPreprocessing.ImportData.Element method) GetBehindSegment() (vampy.automatedPreprocessing.ImportData.Element method) GetBeta() (vampy.automatedPreprocessing.ImportData.Element method) GetBlankedGroupsIdList() (in module vampy.automatedPreprocessing.ImportData) GetFrontSegment() (vampy.automatedPreprocessing.ImportData.Element method) GetGamma() (vampy.automatedPreprocessing.ImportData.Element method) GetId() (vampy.automatedPreprocessing.ImportData.Element method) GetIndexCenterlineForADefinedLength() (in module vampy.automatedPreprocessing.ImportData) GetInletRadius() (vampy.automatedPreprocessing.ImportData.Element method) GetInPointsx0() (vampy.automatedPreprocessing.ImportData.Element method)

GetInPointsx0Id() (vampy.automatedPreprocessing.ImportData.Element method) GetLength() (vampy.automatedPreprocessing.ImportData.Element method) GetListProbePoints() (in module vampy.automatedPreprocessing.ImportData) GetListsUniqueBlankedBranches() (in module vampy.automatedPreprocessing.ImportData) GetMaxGroupId() (in module vampy.automatedPreprocessing.ImportData) GetMeanArea() (vampy.automatedPreprocessing.ImportData.Element method) GetMeanRadius() (vampy.automatedPreprocessing.ImportData.Element method) GetNetworkInletRadius() (vampy.automatedPreprocessing.ImportData.Network method) GetNumberOfBifBranches() (vampy.automatedPreprocessing.ImportData.Network method) GetNumberOfElements() (vampy.automatedPreprocessing.ImportData.Network method) GetNumberOfInlet() (vampy.automatedPreprocessing.ImportData.Network method) GetNumberOfOutlet() (vampy.automatedPreprocessing.ImportData.Network method) GetOutPointsx1() (vampy.automatedPreprocessing.ImportData.Element method) GetOutPointsx1Id() (vampy.automatedPreprocessing.ImportData.Element method) GetRedundantBlankedIdList() (in module vampy.automatedPreprocessing.ImportData) GetSurface() (vampy.automatedPreprocessing.vmtk_pointselector.vmtkSeedSelector method) GetTargetSeedIds() (vampy.automatedPreprocessing.vmtk_pointselector.vmtkSeedSelector method) GetVtkCellIdList() (vampy.automatedPreprocessing.ImportData.Element method) GetVtkGroupIdList() (vampy.automatedPreprocessing.ImportData.Element method)

I

InitializeSeeds() (vampy.automatedPreprocessing.vmtk_pointselector.vmtkPickPointSeedSelector method) is_nan() (in module vampy.automatedPreprocessing.repair_tools) IsAnInlet() (vampy.automatedPreprocessing.ImportData.Element method)

IsAnOutlet() (vampy.automatedPreprocessing.ImportData.Element method) IsArrayDefined() (in module vampy.automatedPreprocessing.ImportData) IsBlanked() (vampy.automatedPreprocessing.ImportData.Element method)

L

loadFile() (in module vampy.automatedPreprocessing.ImportData)

M

main_convert() (in module vampy.automatedPostprocessing.compute_velocity_and_pressure) main_hemo() (in module vampy.automatedPostprocessing.compute_hemodynamic_indices) main_meshing() (in module vampy.automatedPreprocessing.automated_preprocessing) main_metrics() (in module vampy.automatedPostprocessing.compute_flow_and_simulation_metrics) main_probe() (in module vampy.automatedPostprocessing.visualize_probes) make_voronoi_diagram() (in module vampy.automatedPreprocessing.preprocessing_common) make_womersley_bcs() (in module vampy.simulation.Womersley) mesh() (in module vampy.simulation.Artery) (in module vampy.simulation.Atrium) mesh_alternative() (in module vampy.automatedPreprocessing.preprocessing_common) module vampy.automatedPostprocessing.compute_flow_and_simulation_metrics vampy.automatedPostprocessing.compute_hemodynamic_indices vampy.automatedPostprocessing.compute_velocity_and_pressure vampy.automatedPostprocessing.postprocessing_common vampy.automatedPostprocessing.visualize_probes vampy.automatedPreprocessing.automated_preprocessing vampy.automatedPreprocessing.DisplayData vampy.automatedPreprocessing.ImportData vampy.automatedPreprocessing.moving_common vampy.automatedPreprocessing.NetworkBoundaryConditions vampy.automatedPreprocessing.preprocessing_common vampy.automatedPreprocessing.repair_tools vampy.automatedPreprocessing.simulate vampy.automatedPreprocessing.visualize vampy.automatedPreprocessing.vmtk_pointselector vampy.simulation.Artery vampy.simulation.Atrium vampy.simulation.simulation_common vampy.simulation.Womersley

move_surface_model() (in module vampy.automatedPreprocessing.moving_common)

N

Network (class in vampy.automatedPreprocessing.ImportData)

norm_l2() (vampy.automatedPostprocessing.postprocessing_common.STRESS method)

P

PickCallback() (vampy.automatedPreprocessing.vmtk_pointselector.vmtkPickPointSeedSelector method) polyDataToActor() (vampy.automatedPreprocessing.DisplayData.DisplayModel method) pre_solve_hook() (in module vampy.simulation.Artery) (in module vampy.simulation.Atrium) print_mesh_information() (in module vampy.simulation.simulation_common)

print_surface_info() (in module vampy.automatedPreprocessing.repair_tools) problem_parameters() (in module vampy.simulation.Artery) (in module vampy.simulation.Atrium) project_displacement() (in module vampy.automatedPreprocessing.moving_common) provide_region_points() (in module vampy.automatedPreprocessing.preprocessing_common)

R

rate_of_dissipation() (in module vampy.automatedPostprocessing.postprocessing_common) rate_of_strain() (in module vampy.automatedPostprocessing.postprocessing_common) read_command_line() (in module vampy.automatedPostprocessing.postprocessing_common) (in module vampy.automatedPreprocessing.automated_preprocessing)

remesh_surface() (in module vampy.automatedPreprocessing.preprocessing_common) renderWindow() (vampy.automatedPreprocessing.DisplayData.DisplayModel method) run_pre_processing() (in module vampy.automatedPreprocessing.automated_preprocessing) run_simulation() (in module vampy.automatedPreprocessing.simulate)

S

save_displacement() (in module vampy.automatedPreprocessing.moving_common) scale_surface() (in module vampy.automatedPreprocessing.preprocessing_common) set_t() (vampy.simulation.Womersley.WomersleyComponent method) SetAlpha() (vampy.automatedPreprocessing.ImportData.Element method) SetBehindSegment() (vampy.automatedPreprocessing.ImportData.Element method) SetBeta() (vampy.automatedPreprocessing.ImportData.Element method) SetBlanking() (vampy.automatedPreprocessing.ImportData.Element method) SetFrontSegment() (vampy.automatedPreprocessing.ImportData.Element method) SetGamma() (vampy.automatedPreprocessing.ImportData.Element method) SetIfInlet() (vampy.automatedPreprocessing.ImportData.Element method) SetIfOutlet() (vampy.automatedPreprocessing.ImportData.Element method) SetInletRadius() (vampy.automatedPreprocessing.ImportData.Element method) SetInOutPointsCoordinates() (vampy.automatedPreprocessing.ImportData.Element method) SetInOutPointsIds() (vampy.automatedPreprocessing.ImportData.Element method)

SetLength() (vampy.automatedPreprocessing.ImportData.Element method) setLight() (vampy.automatedPreprocessing.DisplayData.DisplayModel method) SetMeanRadius() (vampy.automatedPreprocessing.ImportData.Element method) SetNetworkInletRadius() (vampy.automatedPreprocessing.ImportData.Network method) SetNetworkStructure() (in module vampy.automatedPreprocessing.ImportData) SetOutletRadius() (vampy.automatedPreprocessing.ImportData.Element method) SetRadiusX0() (in module vampy.automatedPreprocessing.ImportData) SetSurface() (vampy.automatedPreprocessing.vmtk_pointselector.vmtkSeedSelector method) setup_model_network() (in module vampy.automatedPreprocessing.preprocessing_common) SetVtkCellIdList() (vampy.automatedPreprocessing.ImportData.Element method) SetVtkGroupIdList() (vampy.automatedPreprocessing.ImportData.Element method) store_u_mean() (in module vampy.simulation.simulation_common) store_velocity_and_pressure_h5() (in module vampy.simulation.simulation_common) STRESS (class in vampy.automatedPostprocessing.postprocessing_common)

T

temporal_hook() (in module vampy.simulation.Artery) (in module vampy.simulation.Atrium)

theend_hook() (in module vampy.simulation.Artery) (in module vampy.simulation.Atrium)

U

UndoCallback() (vampy.automatedPreprocessing.vmtk_pointselector.vmtkPickPointSeedSelector method)

update_pressure_condition() (in module vampy.simulation.Artery)

V

vampy.automatedPostprocessing.compute_flow_and_simulation_metrics module vampy.automatedPostprocessing.compute_hemodynamic_indices module vampy.automatedPostprocessing.compute_velocity_and_pressure module vampy.automatedPostprocessing.postprocessing_common module vampy.automatedPostprocessing.visualize_probes module vampy.automatedPreprocessing.automated_preprocessing module vampy.automatedPreprocessing.DisplayData module vampy.automatedPreprocessing.ImportData module vampy.automatedPreprocessing.moving_common module vampy.automatedPreprocessing.NetworkBoundaryConditions module vampy.automatedPreprocessing.preprocessing_common module

vampy.automatedPreprocessing.repair_tools module vampy.automatedPreprocessing.simulate module vampy.automatedPreprocessing.visualize module vampy.automatedPreprocessing.vmtk_pointselector module vampy.simulation.Artery module vampy.simulation.Atrium module vampy.simulation.simulation_common module vampy.simulation.Womersley module visualize_model() (in module vampy.automatedPreprocessing.visualize) visualize_probes() (in module vampy.automatedPostprocessing.visualize_probes) vmtkPickPointSeedSelector (class in vampy.automatedPreprocessing.vmtk_pointselector) vmtkSeedSelector (class in vampy.automatedPreprocessing.vmtk_pointselector) VtkPointCloud (class in vampy.automatedPreprocessing.DisplayData) VtkText (class in vampy.automatedPreprocessing.vmtk_pointselector)

W

WomersleyComponent (class in vampy.simulation.Womersley)

write_mesh() (in module vampy.automatedPreprocessing.preprocessing_common)

X

x_to_r2() (in module vampy.simulation.Womersley)